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Numerically select fragments, find restriction sites, ORF or any nucleotide or peptide sequence, calculate Tm of selected fragments, %GC or dynamically determine the translation your selection into peptide and calculate the MW using a compact interface.

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Serial Cloner 2.0 now handles Annotations and Features both in the sequence and in the Graphic Map.Īll the tools you need to analyze and manipulate your sequences are available in an all-in-one-window concept. Powerful graphical display tools and simple interfaces help the analysis and construction steps in a very intuitive way. Import from MacVector is also possible now. Serial Cloner also import files saved in the Vector NTI, ApE, pDRAW32 and GenBank formats. Serial Cloner reads and write DNA Strider-compatible files and import and export files in the universal FASTA format.

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There’s a ton of molecular biology softwares out there, so make sure you do your research to find the designer that has the most features you’ll need all in one place.Serial Cloner has been developed to provide a light molecular biology software to both Macintosh and Windows users. This is a great perk and a real time saver. Direct OrderingĪfter your DNA design is finally complete comes the challenge of checking out the synthesis sites and “shopping around”… unless you choose a software that has an ordering feature embedded within it. Make sure the software you choose codon optimizes your design to avoid this “traffic jam” in translation! 10. Too many codons leads to an oversaturation of ribosomes bound to the mRNA in your system. Virtually running a digest on your sequence and simulating the resulting fragments allows you to judge whether or not your gene is in correct orientation for cloning, avoiding errors and saving you time. Look for a software that has embedded emerging technology such as the RBS Calculator to ensure that your design can be completed as quickly and stress-free as possible. Time Saving ToolsĮven though molecular biology software makes DNA design much simpler than it used to be, there are still some tasks that can be tedious and time consuming. Track ChangesĪ necessary feature if you plan on editing your sequence as you go (which most researchers do). Make sure you choose a program that makes this act simple, with organized libraries that you can easily share with others. One of the best things about genetic engineering going digital is the ease with which you can collaborate with other researchers. The best programs will let you easily import many different file formats and databases such as NCBI. File Importįor the times when you’re not starting your project completely from scratch, it’s necessary that a program allows you to import files from elsewhere on the web or saved on your computer. These libraries allow you to store your primers, keep an updated inventory, easily share with others and automatically attach primers to sequences you’re working on (annealing primers). A good software will have features like auto design, cloning, and sequencing primers, as well as a primer library for storing and reusing primers you have previously designed. Primer DesignĮvery molecular biologist understands the importance of primers for successful DNA amplification. It will make your life much easier down the line. Sequence annotation is crucial as a project progresses, so make sure that the software has a simple, organized annotation form.

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It’s great if there is both a manual and auto annotation option so you can choose whichever fits your needs for a specific sequence. Sequence AnnotationĪny good software for designing DNA should allow users to annotate their sequences. Cloning wizards make the process extremely easy simply drag and drop your vector and gene of choice in the wizard, and you can visualize the cloning process. Look for programs with good cloning tools and a choice of methods with which to clone your sequence. This follows the trend of seeking molecular biology software programs that allow you to perform the widest variety of tasks in one place. Here are the ten things you should look for when choosing a DNA design program, whether you end up using Genome Compiler or otherwise.

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While it is very useful, I thought, “wouldn’t it be easier if ONE program could do many of these tasks!?” Luckily, in the time since that list was published, new software has been developed that does! My favorite, Genome Compiler, is an excellent, free program that encompasses many of the features mentioned in the previous list, and will satisfy most of your molecular biology software needs. I recently stumbled upon this list of molecular biology software tools.

Serial cloner feature import